I need your help with the bioenv output visualization

[Dani (Daniele)]

Hello guys,
I'm really happy working on qiime2. But I need your help with the bioenv output visualization.
I used this code:

qiime diversity bioenv --i-distance-matrix bray-curtis_fulldata1.qza --m-metadata-file metadatafull.csv --o-visualization bray-curtis_bioenv_fulldata1.qzv

I was successful in getting the result, but when I added the result/output (bray-curtis_bioenv_fulldata1.qzv) in to qiime2 view I got this:

I'm wondering if is that what we expect as a result? Because I thought it would be a plot!

I couldn't find how this kind of result looks like on the qiimme2 forum even on the internet. So, could you help me, please?

Thank you so much in advance!!

[lizgehret]

Hi @Dani, welcome back to the forum!

Your output viz certainly does look unusual. Developed-under-develop is the only variable that is being pulled, with a size of 1. Does that seem reasonable from your input .qza file? Can you try uploading your bray-curtis_fulldata1.qza file to QIIME 2 View and provide a screenshot of the output viz? This may help us determine where this unusual result is coming from.

Cheers,
Liz

[lizgehret]

Hi @Dani,

Apologies for not clarifying my request a bit further - can you provide a screenshot of the provenance tab after uploading your .qza file to QIIME 2 View?

@Dani

I thought it would be a plot!

The bioenv stat doesn't include any plots, which is where part of your confusion may be coming from. More details on bioenv can be found here, for your reference.

[Dani (Daniele)]

Hi Liz! Thank you very much for your support! I really appreciated that!