Thanks for the tutorial. I am mostly interested in the *.qza to phyloseq functionality. Having a bit of trouble with that. I get an error message using qza_to_phyloseq.
Error in unzip(file, exdir = tmp, list = TRUE) :
zip file ‘DSEL16_whaleSIPABC_metadata.tsv’ cannot be opened
I am sure I don’t just have a typo in the filename. Rather I am wondering if maybe qza_to_phyloseq expects exactly three qza files? (I only have two, OTU table and taxonomy)