How do I specify multiple metrics other than the default ones?
Hi,
Right now, you cannot run multiple metrics in one command in Qiime2. However, it can be done using the Python API using a for loop. You can see an example here. Otherwise, you can just use a bash script and run each metric separately like they do here.
To see a list of all of the input options and their explanations, check out this list.
Best,
Stephanie
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