How to produce a merged feature table?

[andrewsanchez]

@wburgess , @llenzi shared a post with me in which they wre discussing something similar with @SoilRotifer:

Merging data from different runs/ plates in manifest step or after

Good day, I had samples processed over 2 MiSeq runs, where all the amplicons (515F-806R) were pooled into one library and sequenced twice. I intend on merging the data sets for analysis. Now, I have read through the two threads: https://forum.qiime2.org/t/merging-data-from-different-runs-and-plates/3428 https://forum.qiime2.org/t/merge-seqs-and-tables-with-overlapping-sample-ids/12713/2 But still, have questions: So far, my methodology has included creating a manifest to join all the paire…

I think this could provide a good starting point for you! Please feel free to follow up with any specific questions.