how to make visualizer of alfa index?

[kevin_SalOrt]

Hi! I'm making analysis of alpha and beta diversity, so i generated chao1, shannon and simpson's index with the command line:

qiime diversity alpha --i-table secuencias/table.qza --p-metric chao1 --o-alpha-diversity aplha_index/chao1 --verbose

qiime diversity alpha --i-table secuencias/table.qza --p-metric simpson --o-alpha-diversity aplha_index/simpson_index --verbose

qiime diversity alpha --i-table secuencias/table.qza --p-metric shannon --output-dir aplha_index --verbose

I only got the qza artifacts but i want to make the qzv file, do you know the command line to make it?

[colinbrislawn (Colin J Brislawn)]

Hello Kevin,

Now that you have the tables (qza), you can plug those into a visualizer (qzv):
https://docs.qiime2.org/2022.2/plugins/available/diversity/#visualizers

For more context, check on this section of the PD-Mouse tutorial.

[kevin_SalOrt]

thanks, that was very helpful