How to get the KO count from predicted functional profiles

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1

Hello!

I'm trying to get the KO count of each predicted functional profile from picrust2 with results such as "A total of n KOs" for a certain kind of pathway.

I need to know how these are counted because I tried counting the number of instances a pathway is predicted in my stratified results from picrust2 and I would get values up to more than 100.

2

Hi @juliaau

Can you provide the following files:

  • pred_metagenome_strat.tsv
  • ko_to_pathway_mapping.csv

Many thanks!

-Mike