Hello,
I am using https://cancer.usegalaxy.org/ to analyse a dataset containing the bacterial 16S V4 region in some environmental sample. My taxonomy assigned OTU table has some archaea. How can I get rid of the Archaea species before rarefying my data?
I tried to manually remove the Archaea spp. from the excel sheet and converted the excel's file format from xlxs to BIOM.
Then I uploaded the data to galaxy and used QIIME 2 tools import to import the data as featuretable [Frequency] in BIOMV210 format but the qza file I got could be be used to plot an alpha rarefaction curve.
How can I address this issue?
Thank you in Advance,
Brigitta