How to get relative abundance values of OTUs?

fgara · January 25, 2021, 2:46pm

Dear all,

I know that I can get a text file containing absolute frequencies / counts of each OTU from a FeatureTable[Frequency] QIIME 2 artifact (e.g. my table.qza file) by exporting it to .biom and then converting it to tsv using "biom convert" command, but is there a way to get relative abundance/relative frequency values of OTUs directly in QIIME2?

Many thanks

jwdebelius · January 25, 2021, 4:34pm

Hi @fgara,

There's a relative frequency conversion command in q2-feature-table.

Best,
Justine

system · February 25, 2021, 10:34pm

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