I am trying to import data using the manifest option and am having difficulties with the absolute file path. I have read similar posts and tried what they tried, but with no success.
I am running Qiime2 2019.10 on Windows Subsystem for Linux (WSL), installed via miniconda.
My fastq files are in a folder.
My manifest file is formatted like this:
And when I run this command:
(qiime2-2019.10) [email protected]:/mnt/d/Data$ qiime tools import --type SampleData[PairedEndSequencesWithQuality] --input-path test-manifest --output-path PairedEndDemux.qza --input-format PairedEndFastqManifestPhred33
There was a problem:
An unexpected error has occurred:
> All paths provided in manifest must be absolute but found relative path: /mnt/d/data/RawData/test/FDMP20H000275-1a_L1_C1_1.fq.gz > > See above for debug info.
Any other ideas?