I have an ancom.tsv which contains the ids of differentially abundant features .Could I easiliy get a taxonomy table (FeatureTable[Taxonomy]) which only contain the feature include ancom.tsv? Which action should I use?
How to filter a taxonomy table (FeatureData[Taxonomy]) with a metadata file contained id of features
Hi there!
Did you try something like this? First create a features-to-keep.tsv file which contains only features IDs you want to keep with proper name of the column (Feature ID)
qiime feature-table filter-features \
--i-table table.qza \
--m-metadata-file features-to-keep.tsv \
--o-filtered-table filtered-table.qza
thx u!
actually I want to filter a FeatureTable【taxonomy】,not FeatureTable【Frequency】
Hello there, @sixvable!
There is no such semantic type in QIIME 2. Do you mean FeatureData[Taxonomy]
?
Yes,a FeatureData【taxonomy】,my mistake
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