I have an ancom.tsv which contains the ids of differentially abundant features .Could I easiliy get a taxonomy table (FeatureTable[Taxonomy]) which only contain the feature include ancom.tsv? Which action should I use?
How to filter a taxonomy table (FeatureData[Taxonomy]) with a metadata file contained id of features
Did you try something like this? First create a features-to-keep.tsv file which contains only features IDs you want to keep with proper name of the column (Feature ID)
qiime feature-table filter-features \ --i-table table.qza \ --m-metadata-file features-to-keep.tsv \ --o-filtered-table filtered-table.qza
actually I want to filter a FeatureTable【taxonomy】，not FeatureTable【Frequency】
Hello there, @sixvable!
There is no such semantic type in QIIME 2. Do you mean
Yes，a FeatureData【taxonomy】，my mistake