how to extract the biom file in the table.qza file while inside the docker container

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1

how to extract the biom file in the table.qza file while inside the docker container?
In my normal qiime2 setup I use something like unzip -j table.qza "*.biom" -d targetdir
The default docker container does not contain unzip. Is there a way to add unzip to the container? I'm not a docker expert.

2

Hello again @fenny :wave:,

I think that docker container comes with conda, so you can use conda to install software you need including zip / unzip etc.

conda install -c conda-forge unzip

You could also copy that file from your docker service to the host machine, then proceed from there.