How to extract specific sequences per sample?

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1

Hi,

I want to extract specific sequences and check their abundance in different samples/ know from which sample they originate.

I have 16S data, and I’m interested in just specific group of microorganisms. So, I would like to extract their sequences in order to create a phylogenetic tree, and be able to link the obtained results with samples metadata.

Is that possible?

Thanks in advance!

2

Hi @vjera,

It sounds like you simply would like a means to filter / subset your data. You can do so by following the examples as outlined here. More specifically, this section.

You can also find more help via the QIIME Docs.

-Best wishes

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