How to do the diversity analysis just for one body site

Hi, I’ve recently started to learn microbiome analysis using qiime2 and have a basic question.
I have blood and mouth data for body site in my metadata and I want to pick up data just for the mouth and want to do a longitudinal comparison.
Is there any command for filtering data before going for diversity analysis?

Hi @Dawud922,
Welcome to the forum.
You can find a series of filtering example in the filtering tutorial here. Good luck!

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