I have just a question;
How to deal with the NAs after mapping to silva?
If could please provide some insights about it?
Thanks
HI @MarwaTawfik,
By "NAs" I assume you are referring to lack of classification at a particular taxonomic rank?
Please provide more information:
- Which variable region are you using? V1V3? V4? other?
- How are you trying to classify your sequences? vsearch, BLAST, naive bayes?
- Which version of QIIME 2 and SILVA db are you using?
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