Jibda
(Jibda del Pilar Carreño)
February 6, 2018, 9:01pm
1
Hi, everybody
I´m doing the taxonomy analysis, but I have a doubt.
The taxa bar plots represents all the samples (12), but the 12 samples actually are only 4 samples and its replicates.
And I want to collapse the total 12 samples that the plot shows in to the 4 different samples that actually exists.
I upload the file:slightly_smiling_face:.
taxa-bar-plots.qzv (340.8 KB)
1 Like
Good afternoon,
Great question! If you would like to group these replicates together so you only see the 4 main group, you can use this qiime 2 plugin: https://docs.qiime2.org/2017.12/plugins/available/feature-table/group/
Let me know if that looks like the plugin will work for you
Colin
3 Likes
Jibda
(Jibda del Pilar Carreño)
February 7, 2018, 3:11pm
3
Hi, @colinbrislawn . It worked Thanks!.
This is the command line I used:
qiime feature-table group
–i-table table.qza
–p-axis sample
–m-metadata-file metadata.tsv
–m-metadata-category “Description”
–p-mode mean-ceiling
–o-grouped-table grouped-table.qza
“Description” is the category I want to join the samples.
I´m just post this for the other people with the same doubt
8 Likes
system
(system)
Closed
March 10, 2018, 9:11pm
4
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