How does qiime feature-classifier classified-sklearn work?

Hello Iris,

Welcome to the forums! :qiime2:

Great question!

Short answer: it's a Naive Bayes kmer classifier that's essentially like the RDP Wang classifier and the Mothur classifier.

Long answer: Feature-classifier explained in detail - #3 by Nicholas_Bokulich
Paper on classifiers in Qiime2 :scroll: Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin | Microbiome | Full Text


:scream_cat:

Or maybe it's a good thing: Qiime 2 should offer better taxonomic resultsion than Qiime 1, so maybe this is a useful finding / correction to the original work :man_shrugging:

Colin

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