How can i filter controls from rep seq?


I already filtered table.qza file from controls using this command :
qiime feature-table filter-samples
--i-table table.qza
--m-metadata-file samples-to-keep.tsv
--o-filtered-table id-filtered-table.qza

I would like to filter rep-seqs.qza file from controls. Wich command can i use and is it possible to filter those sequences using meta data file.tsv ?


Here is a plugin for the job. Provide your sequences to filter and feature table that already filtered. Only features that are present in the feature table will remain in sequences artifact.

1 Like

thank you for your help @timanix

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