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fasta_file_new2.qza (133.8 KB)
feature-table_bact_OTUtable_runs3to8_NEW.qza (503.3 KB)
2.I tried to take an existing OTU table and fasta file representative sequences and upload them in qiime2 format. I have attached the files.
- Below is the full error
Command: vsearch --usearch_global /tmp/tmpdlo96307 --id 0.3 --db /tmp/qiime2-archive-4rbmg1by/8f0d60d6-00c8-4a2c-ab1a-788746d54
125/data/dna-sequences.fasta --uc /tmp/tmp6ld5fb6x --strand plus --qmask none --notmatched /tmp/tmpltx9moo9 --threads 0
vsearch v2.7.0_linux_x86_64, 125.9GB RAM, 32 cores
Reading file /tmp/qiime2-archive-4rbmg1by/8f0d60d6-00c8-4a2c-ab1a-788746d54125/data/dna-sequences.fasta 100%
142290491 nt in 99322 seqs, min 1254, max 2353, avg 1433
Masking 100%
Counting k-mers 100%
Creating k-mer index 100%
Searching
Fatal error: Invalid (zero) abundance annotation in FASTA file header
Traceback (most recent call last):
File "/home/malbright/anaconda3/envs/qiime2-2018.2/lib/python3.5/site-packages/q2cli/commands.py", line 246, in call
results = action(**arguments)
File "", line 2, in cluster_features_closed_reference
File "/home/malbright/anaconda3/envs/qiime2-2018.2/lib/python3.5/site-packages/qiime2/sdk/action.py", line 228, in bound_callable
output_types, provenance)
File "/home/malbright/anaconda3/envs/qiime2-2018.2/lib/python3.5/site-packages/qiime2/sdk/action.py", line 363, in callable_executor
output_views = self._callable(**view_args)
File "/home/malbright/anaconda3/envs/qiime2-2018.2/lib/python3.5/site-packages/q2_vsearch/_cluster_features.py", line 256, in cluster_features_closed_reference
run_command(cmd)
File "/home/malbright/anaconda3/envs/qiime2-2018.2/lib/python3.5/site-packages/q2_vsearch/_cluster_features.py", line 33, in run_command
subprocess.run(cmd, check=True)
File "/home/malbright/anaconda3/envs/qiime2-2018.2/lib/python3.5/subprocess.py", line 398, in run
output=stdout, stderr=stderr)
subprocess.CalledProcessError: Command '['vsearch', '--usearch_global', '/tmp/tmpdlo96307', '--id', '0.3', '--db', '/tmp/qiime2-archive-4rbmg1by/8f0d60d6-00c8-4a2c-ab1a-788746d54125/data/dna-sequences.fasta', '--uc', '/tmp/tmp6ld5fb6x', '--strand', 'plus', '--qmask', 'none', '--notmatched', '/tmp/tmpltx9moo9', '--threads', '0']' returned non-zero exit status 1
Thanks!