What are the hardware requirements ( RAM etc) for running by qiime vsearch dereplicate-sequences, qiime vsearch cluster-features-de-novo and qiime feature-classifier classify-consensus-vsearch?,
Welcome to the forums!
vsearch dereplicate-sequences and
cluster-features-de-novo take about the same amount of RAM as the reads after they have been dereplicated or clustered according to the coauthor... So I guess the answer is: try it and see if it works! Sometimes 8gb is enough, and sometimes you need more.
classify-consensus-vsearch has to load the database into RAM, so you need roughly as much RAM as the database size.
This topic was automatically closed 31 days after the last reply. New replies are no longer allowed.