I was trying to download the HMP data from Qiita and import them to Qiime2 for the downstream analyses. They have provided the processed data based on the SortMeRNA algorithm (unfortunately, they did not have the deblur outputs), which contains the following files:
I encountered this nice tutorial on transferring Qiita artifacts to Qiime2; however, the tutorial did not cover how to generate rep-seqs.qza from the outputs of SortMeRNA.
I wonder if there is any way we can generate the rep-seqs.qza from the SortMeRNA outputs? Thanks in advance!