Hi, I am running QIIME2-2023.2 in a conda environment.
I was wondering if it is possible to generate rooted-tree or taxonomy files that only contain data upto, let's say, the family level. I am trying to generate phylogenetic trees (using iTOL) that are getting very complicated and I am unable to collapse specific classes within iTOL.
I was wondering if there is a way to do something like this through QIIME2 where the generated rooted-tree through beta diversity or taxonomic analyses can be limited to a particular class level.
It looks like this is a very similar post to your other submission here. I'm going to go ahead and merge this into the original topic. Please refrain from creating duplicate posts, just to help us stay organized on our end and allow us to more efficiently assist you. Thanks!
