I work on 2019.10 version and I just want to get a box plot to visualize my alpha diversity analysis, but unfortunately as long as I try I can’t found some post which explain how to generate box plot for alpha diversity visualization (for instance, I want to visualize Chao1 parameter result using box plot). Is it possible to get it? Do I missed some posts which explain about that?
Thank you for your help and kind attention.
Dear @colinbrislawn,
Is it possible to get something like this?
Because there are only 3 options in alpha rarefaction metric such as faith pd, shannon, and observed otus.
Thank you for your help
Specifically, if you want to perform a group comparison of these results, alpha running qiime diversity alpha you can run qiime diversity alpha-group-significance, to generate interactive box plots of the group diversity distributions.