fragment_insertion

[SoilRotifer (Mike Robeson)]

Hi @chiara,

How many sequences are you trying to insert into the silva tree? How much available memory and storage do you have on your system?

Here are a couple of other related threads:

fragment-insertion sepp error

Hi @colinbrislawn, I encountered a similar error. qiime version 2019.10 My input file size is 815KB. I also tried another with 794KB but had the same issues. I am using Imac with 32GB memory. What could be the problem? coomand: qiime fragment-insertion sepp --i-representative-sequences “my_rep_seq.qza” --i-reference-database “Silva 128 SEPP reference from qiime2 data resources” --output-dir “my folder” –p-threads 3 # I used the default as well My log 1: Removing /var/folders/rz/v666w…

Error when running insert-fragment sequences using SEPP

Hi Stefan, Just an update, I updated my qiime 2 version to qiime2-2019.4 and now I can’t seem to get the fragment-insertion SEPP to run at all. I’m not sure if what sort of error it is but I wanted to post the report encase anyone else has the same issue. input: qiime fragment-insertion sepp \ --i-representative-sequences rep-seqs.qza \ --i-reference-alignment gg_99_otus_aligned.qza \ --i-reference-phylogeny gg_99_otus_annotated_tre.qza \ --p-threads 0 \ --o-tree i…

-Mike