Filtering Blank Taxonomic Ranks for Import into Phyloseq

[bsen2018]

Hi @Todd_Testerman
We did face a similar issue but then it got resolved when we read the following tutorial:

Tutorial: Integrating QIIME2 and R for data visualization and analysis using qiime2R

Tutorial: Integrating QIIME2 and R for data visualization and analysis using qiime2R (March 2020 Update v0.99.20) Background The qiime artifact is a method for storing the input and outputs for QIIME2 along with associated metadata and provenance information about how the object was formed. This method of storing objects has a number of obvious advantages; however, on the surface it does not lend itself to easy import to R for the R-minded data scientist. In reality, the .qza file is a compresse…

Good luck!