filter taxonomy for relative frequency table

[annsantos (Ana Santos)]

Hi,

I want to do a relative frequency table but without some taxa such as mitocondria.
I was able to filter mitocondrias from my table.qza

qiime taxa filter-table \

--i-table table.qza
--i-taxonomy taxonomy.qza
--p-exclude mitochondria
--o-filtered-table table-no-mitochondria.qza

However, when i have to do a relative frequncy table i have to use table.qza and i can't use the table-no-mitocrondia.qza, and that way mitocondria appear in my frequency table. How i remove them?

[Nicholas_Bokulich]

@annsantos

However, when i have to do a relative frequncy table i have to use table.qza and i can’t use the table-no-mitocrondia.qza

why not? just do this:

qiime feature-table relative-frequency \
  --i-table table-no-mitocrondia.qza \
  --o-relative-frequency-table table-no-mitocrondia-rel-freq.qza

If you are getting an error message, please report the full message so we can troubleshoot. Thanks!