I'm trying to create taxonomic barplots comparing the core microbiome of skin and gut samples. I'm trying to follow the script posted in the topic here, More complex Core Microbiome but it's producing an empty bar plot, I suspect that the qza table I'm getting from running feature-table filter-features is empty as well. As I understand, the IDs in the metadata file should be retained, am I excluding them instead?
Here's my script and outputs so far, thanks!
qiime feature-table filter-features
qiime taxa barplot