Hello,
I created a new environment for qiime2-2019.10 and named it qiime22-2019.10 to avoid any conflict when installing q2-SCNIC plugin (based on posted recommendations here
q2-SCNIC: A tool for making correlation networks, finding modules of observations and summarizing them
when I ran:
conda install -c lozuponelab q2-SCNIC
I got this error
Collecting package metadata: done
Solving environment: failed
PackagesNotFoundError: The following packages are not available from current channels:
- q2-scnic -> q2-types=2018.11
- q2-scnic -> qiime2=2018.11
- q2-scnic -> scnic[version=’>=0.6.*’]
Current channels:
- https://conda.anaconda.org/lozuponelab/linux-64
- https://conda.anaconda.org/lozuponelab/noarch
- https://repo.anaconda.com/pkgs/main/linux-64
- https://repo.anaconda.com/pkgs/main/noarch
- https://repo.anaconda.com/pkgs/free/linux-64
- https://repo.anaconda.com/pkgs/free/noarch
- https://repo.anaconda.com/pkgs/r/linux-64
- https://repo.anaconda.com/pkgs/r/noarch
To search for alternate channels that may provide the conda package you’re
looking for, navigate to
https://anaconda.org
and use the search bar at the top of the page.
#I searched similar topics and found this code
conda install -c lozuponelab -c conda-forge -c bioconda -c defaults --override-channels q2-SCNIC
That ended up to a new error:
Collecting package metadata: done
Solving environment: failed
UnsatisfiableError: The following specifications were found to be in conflict:
- q2-scnic
Use “conda search --info” to see the dependencies for each package.
These are info of installed qiime environment:
$qiime info
System versions
Python version: 3.6.7
QIIME 2 release: 2019.10
QIIME 2 version: 2019.10.0
q2cli version: 2019.10.0
Installed plugins
alignment: 2019.10.0
composition: 2019.10.0
cutadapt: 2019.10.0
dada2: 2019.10.0
deblur: 2019.10.0
demux: 2019.10.0
diversity: 2019.10.0
emperor: 2019.10.0
feature-classifier: 2019.10.0
feature-table: 2019.10.0
fragment-insertion: 2019.10.0
gneiss: 2019.10.0
longitudinal: 2019.10.0
metadata: 2019.10.0
phylogeny: 2019.10.0
quality-control: 2019.10.0
quality-filter: 2019.10.0
sample-classifier: 2019.10.0
taxa: 2019.10.0
types: 2019.10.0
vsearch: 2019.10.0
May you please explain these errors to me since I did not find any updates for installing q2-SCNIC in the new qiime release?
Thanks