Exporting DADA2 (R package) results to work with qiime2

[thermokarst]

Hi @Jaroslaw_Grzadziel!

@Jaroslaw_Grzadziel

I want to ask if anybody know how exactly move from R to q2 ?

Have you had a chance to review this topic from a few months back?

Dada2 back to qiime 2

Hi All, Due to slow running time, I ran dada2 independently using R. However, I have an issue: How do I create a phylogenetic tree in Qiime2? Procedure: I saved the output of the dada2 taxa file transformed it and created a taxa table: taxat <- t(taxa)#transpose the table taxat <- cbind('#OTUID' = rownames(taxat ), taxat)#Add '#OTUID' to the header (required by biom) write.table(taxa, "dada2_taxa.txt", sep='\t', row.names=FALSE, quote=FALSE) I converted the dada2_taxa.txt into a biom table…

Let us know if that gets you moving in the right direction! Thanks!