Explore different taxa ratios

[colinbrislawn (Colin J Brislawn)]

In addition to gneiss, you could check out ANCOM:
https://docs.qiime2.org/2022.8/tutorials/moving-pictures-usage/#differential-abundance-testing-with-ancom

For other ways to compare taxa between groups, check out this thread:

taxonomy analyses, differential abundance

Hello, For my project I am comparing the gut microbiome of two different clinical group (patients who gained weight vs lost weight after an intervention) and whether it changed over time (before and after intervention). So basically for each individual I have two different gut microbiome samples. The diversity analyses results showed that the microbiome of the group that lost weight had a lower diversity after intervention. What I’m struggling with is the taxonomy analyses. My first question…