Hi again guys,
It sounds parameter --p-n-jobs
with digit 5 is unable to work in my case when a lot of data is downloading.
While I wanted to download lots of data with gene name, I got this error (it take around 20 min to get the error):
qiime rescript get-ncbi-data \
--p-query dsrB \ --o-sequences RefsequencesdsrB.qza \
–p-n-jobs 5
–o-taxonomy 11.qza
Plugin error from rescript:
A worker process managed by the executor was unexpectedly terminated. This could be caused by a segmentation fault while calling the function or by an excessive memory usage causing the Operating System to kill the worker.
The exit codes of the workers are {SIGKILL(-9)}
Debug info has been saved to /tmp/qiime2-q2cli-err-3qh5xqo6.log
In the guideline it mentions to digit 5 " If you are downloading lots of data, you should set the --p-n-jobs
parameter to a number greater than one. Five works well in most cases." It failed then!
The only way that I catch all data is gene name, because accession number and GI are exclusively unique, then I used gene name in order to get all data. Would it be the point? How the problem could be solved? What do you think?
Thanks a lot.
Qiimer