Hi guys!
I have some trouble with installing q2-picrust2 plugin through conda
I am following the q2-picrust2 community toturial
The environment I used is CentOS7.7 .Memory is 256GB.
I try to install this plugin under both qiime2-2019.7 and qiime2-2019.10 conda environment but it always has some trouble.
Here is some error log.
$conda install q2-picrust2=2019.7 -c conda-forge -c bioconda -c gavinmdouglas
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: done
## Package Plan ##
environment location: /home/djShen/miniconda3/envs/qiime2-2019.7
added / updated specs:
- q2-picrust2=2019.7
The following packages will be downloaded:
package | build
---------------------------|-----------------
epa-ng-0.3.5 | he860b03_0 1.3 MB bioconda
gappa-0.4.0 | he860b03_0 1.2 MB bioconda
libidn2-2.3.0 | h516909a_0 97 KB conda-forge
q2-picrust2-2019.7 | py36_0 39 KB gavinmdouglas
r-castor-1.4.1 | r35h0357c0b_1 1.2 MB conda-forge
r-naturalsort-0.1.3 | r35h6115d3f_1002 21 KB conda-forge
r-nloptr-1.2.1 | r35h0357c0b_1 468 KB conda-forge
------------------------------------------------------------
Total: 4.2 MB
The following NEW packages will be INSTALLED:
coverage conda-forge/linux-64::coverage-4.5.4-py36h516909a_0
epa-ng bioconda/linux-64::epa-ng-0.3.5-he860b03_0
gappa bioconda/linux-64::gappa-0.4.0-he860b03_0
glpk conda-forge/linux-64::glpk-4.65-he80fd80_1002
hmmer bioconda/linux-64::hmmer-3.2.1-he1b5a44_2
libidn2 conda-forge/linux-64::libidn2-2.3.0-h516909a_0
libunistring conda-forge/linux-64::libunistring-0.9.10-h14c3975_0
picrust2 bioconda/noarch::picrust2-2.2.0_b-py_0
pytest-cov conda-forge/noarch::pytest-cov-2.8.1-py_0
q2-picrust2 gavinmdouglas/noarch::q2-picrust2-2019.7-py36_0
r-castor conda-forge/linux-64::r-castor-1.4.1-r35h0357c0b_1
r-naturalsort conda-forge/noarch::r-naturalsort-0.1.3-r35h6115d3f_1002
r-nloptr conda-forge/linux-64::r-nloptr-1.2.1-r35h0357c0b_1
wget conda-forge/linux-64::wget-1.20.1-h22169c7_0
The following packages will be UPDATED:
ca-certificates 2019.6.16-hecc5488_0 --> 2019.9.11-hecc5488_0
certifi 2019.6.16-py36_1 --> 2019.9.11-py36_0
openssl 1.1.1c-h516909a_0 --> 1.1.1d-h516909a_0
Proceed ([y]/n)? y
Downloading and Extracting Packages
r-naturalsort-0.1.3 | 21 KB | ############################################################# | 100%
q2-picrust2-2019.7 | 39 KB | ############################################################# | 100%
epa-ng-0.3.5 | 1.3 MB | ############################################################# | 100%
libidn2-2.3.0 | 97 KB | ############################################################# | 100%
r-castor-1.4.1 | 1.2 MB | ############################################################# | 100%
r-nloptr-1.2.1 | 468 KB | ############################################################# | 100%
gappa-0.4.0 | 1.2 MB | ############################################################# | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: / b'ERROR: post-link.sh was unable to download /home/djShen/miniconda3/envs/qiime2-2019.7/staging/v2.2.0-b.tar.gz with the sha256 c41e1f487b33179f4aecede50cfd8b652aa3cef2ea1ae5fd022f531c7d549097 from https://github.com/picrust/picrust2/archive/v2.2.0-b.tar.gz.\n' done
ERROR conda.core.link:_execute(700): An error occurred while installing package 'bioconda::picrust2-2.2.0_b-py_0'.
Rolling back transaction: done
LinkError: post-link script failed for package bioconda::picrust2-2.2.0_b-py_0
location of failed script: /home/djShen/miniconda3/envs/qiime2-2019.7/bin/.picrust2-post-link.sh
==> script messages <==
ERROR: post-link.sh was unable to download /home/djShen/miniconda3/envs/qiime2-2019.7/staging/v2.2.0-b.tar.gz with the sha256 c41e1f487b33179f4aecede50cfd8b652aa3cef2ea1ae5fd022f531c7d549097 from https://github.com/picrust/picrust2/archive/v2.2.0-b.tar.gz.
==> script output <==
stdout: /home/djShen/miniconda3/envs/qiime2-2019.7/staging/v2.2.0-b.tar.gz: FAILED
stderr: QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment.
--2019-11-15 08:06:19-- https://github.com/picrust/picrust2/archive/v2.2.0-b.tar.gz
Resolving github.com (github.com)... 13.250.177.223
Connecting to github.com (github.com)|13.250.177.223|:443... connected.
HTTP request sent, awaiting response... 302 Found
Location: https://codeload.github.com/picrust/picrust2/tar.gz/v2.2.0-b [following]
--2019-11-15 08:06:21-- https://codeload.github.com/picrust/picrust2/tar.gz/v2.2.0-b
Resolving codeload.github.com (codeload.github.com)... 54.251.140.56
Connecting to codeload.github.com (codeload.github.com)|54.251.140.56|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: unspecified [application/x-gzip]
Saving to: ‘/home/djShen/miniconda3/envs/qiime2-2019.7/staging/v2.2.0-b.tar.gz’
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7700K ........ 26.8K=6m1s
2019-11-15 08:12:24 (21.3 KB/s) - ‘/home/djShen/miniconda3/envs/qiime2-2019.7/staging/v2.2.0-b.tar.gz’ saved [7893000]
sha256sum: WARNING: 1 computed checksum did NOT match
return code: 1
()
It seem that a package sha256 is not correct.What should I do to fix this problem?
