I am going to install the qiime2-2022.2 with conda on my mac, however, the same error happened for many times and can't be solved. Could you please do me a favor?
I succeeded in the installation of the miniconda and made some settings before install qiime2
(wget https://repo.anaconda.com/miniconda/Miniconda3-latest-MacOSX-x86_64.sh -O ~/miniconda.sh; bash ~/miniconda.sh -b -p $HOME/miniconda; source ~/miniconda/bin/activate;
conda init zsh; conda update conda), these codes are working well.
And then I installed the qimme2-2022.2 using the codes "wget https://data.qiime2.org/distro/core/qiime2-2022.2-py38-osx-conda.yml
conda env create -n qiime2-2022.2 --file qiime2-2022.2-py38-osx-conda.yml", and get the error "ERROR conda.core.link:_execute(730): An error occurred while installing package 'bioconda::bioconductor-genomeinfodbdata-1.2.7-r41hdfd78af_1'. Rolling back transaction: done
post-link script failed for package bioconda::bioconductor-genomeinfodbdata-1.2.7-r41hdfd78af_1
location of failed script: /Users/jiangkun/miniconda/envs/qiime2-2022.2/bin/.bioconductor-genomeinfodbdata-post-link.sh ..........(many lines)"
I realized the installation fail was caused by package 'bioconda::bioconductor-genomeinfodbdata-1.2.7-r41hdfd78af_1', so I download this package and installed locally (conda install ~/Downloads/bioconductor-genomeinfodbdata-1.2.7-r41hdfd78af_1.tar.bz2), however, I got the error same with above. Any answer or suggestions will be appreciated.
Welcome to the forum!
From the error message you provided, it seems like there might be an issue with your conda environment(s) - can you run the following command for me and copy/paste the output in your response:
conda env list
The output of "conda env list" are as follow:
conda env list
base * /Users/jiangkun/miniconda
Looking forward to your reply!
Thanks for sharing that! If you are working with a new mac that uses an M1 arm chip (thus requiring osx-arm64 builds), this forum post may provide a suitable workaround for you. Let us know if this doesn't resolve the issue!
An off-topic reply has been split into a new topic: Error installing qiime2 2022.2 on linux
Please keep replies on-topic in the future.
This topic was automatically closed 31 days after the last reply. New replies are no longer allowed.