Error installing Qiime2 on Mac M1 pro

Technical Support
,
1

Dear Support

I have been trying to installed Qiime2 Amplicon on my mac with M1 Pro chip . I have followed the instruction like following:

softwareupdate --install-rosetta
/usr/sbin/softwareupdate --install-rosetta --agree-to-license

By using the agreetolicense option, you are agreeing that you have run this tool with the license only option and have read and agreed to the terms.

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2024-06-20 20:00:58.885 softwareupdate[2510:24314] Package Authoring Error: 062-01890: Package reference com.apple.pkg.RosettaUpdateAuto is missing installKBytes attribute

Install of Rosetta 2 finished successfully

conda init

conda update conda

Channels:
- conda-forge
- bioconda
- defaults
Platform: osx-arm64
Collecting package metadata (repodata.json): done
Solving environment: done

All requested packages already installed.

conda install wget

Channels:
- conda-forge
- bioconda
- defaults
Platform: osx-arm64
Collecting package metadata (repodata.json): done
Solving environment: done
# All requested packages already installed.

macOS (Apple Silicon)

wget https://data.qiime2.org/distro/amplicon/qiime2-amplicon-2024.5-py38-osx-conda.yml

CONDA_SUBDIR=osx-64 conda env create -n qiime2 --file qiime2-amplicon-2024.5-py38-osx-conda.yml

here comes the error:

Channels:

  • released
  • bioconda
  • conda-forge
  • defaults
    Platform: osx-64
    Collecting package metadata (repodata.json): done
    Solving environment: failed
    Channels:
  • released
  • bioconda
  • conda-forge
  • defaults
    Platform: osx-64
    Collecting package metadata (repodata.json): done
    Solving environment: failed

LibMambaUnsatisfiableError: Encountered problems while solving:

  • package bleach-6.1.0-pyhd8ed1ab_0 is excluded by strict repo priority
  • package c-ares-1.28.1-h10d778d_0 is excluded by strict repo priority
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  • package perl-carp-1.50-pl5321hd8ed1ab_0 is excluded by strict repo priority
  • package perl-compress-raw-zlib-2.202-pl5321h775f41a_0 is excluded by strict repo priority
  • package perl-encode-3.21-pl5321h10d778d_0 is excluded by strict repo priority
  • package perl-exporter-5.74-pl5321hd8ed1ab_0 is excluded by strict repo priority
  • package perl-extutils-makemaker-7.70-pl5321hd8ed1ab_0 is excluded by strict repo priority
  • package perl-parent-0.241-pl5321hd8ed1ab_0 is excluded by strict repo priority
  • package perl-scalar-list-utils-1.63-pl5321h775f41a_0 is excluded by strict repo priority
  • package argh-0.31.2-pyhd8ed1ab_0 is excluded by strict repo priority
  • nothing provides r 3.2.2* needed by r-jsonlite-0.9.19-r3.2.2_0
  • package yq-3.4.3-pyhd8ed1ab_0 requires xmltodict >=0.11.0, but none of the providers can be installed
  • package rescript-2024.5.0-py39hd7eca50_0 requires scikit-bio 0.6.0.*, but none of the providers can be installed
  • package q2-vsearch-2024.5.0-py39h3a98678_0 requires biom-format 2.1.15.*, but none of the providers can be installed
  • package q2-quality-control-2024.5.0-py39hedc2112_0 requires r-optparse >=1.7.1, but none of the providers can be installed
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  • nothing provides r 3.2.2* needed by r-yaml-2.1.13-r3.2.2_0
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  • nothing provides r 3.2.2* needed by r-magrittr-1.5-r3.2.2_0
  • nothing provides r 3.2.2* needed by r-abind-1.4.3-r3.2.2_0
  • nothing provides r 3.2.2* needed by r-digest-0.6.9-r3.2.2_0
  • package bioconductor-phyloseq-1.46.0-r43hdfd78af_0 requires r-ade4 >=1.7-4, but none of the providers can be installed
  • nothing provides r 3.2.2* needed by r-bit64-0.9_5-r3.2.2_0
  • package biopython-1.83-py39he962182_0 is excluded by strict repo priority
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  • package r-ggrepel-0.9.5-r43h29979af_0 is excluded by strict repo priority
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  • package r-progress-1.2.3-r43hc72bb7e_0 is excluded by strict repo priority
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  • package r-rematch2-2.1.2-r43h142f84f_0 is excluded by strict repo priority
  • package r-rmarkdown-2.27-r43hc72bb7e_1 is excluded by strict repo priority
  • package r-rtsne-0.17-r43h71b1e59_0 is excluded by strict repo priority
  • package r-scales-1.3.0-r43hc72bb7e_0 is excluded by strict repo priority
  • package r-snow-0.4_4-r43h142f84f_0 is excluded by strict repo priority
  • package r-stringr-1.5.1-r43h785f33e_0 is excluded by strict repo priority
  • package r-tibble-3.2.1-r43h6dc245f_2 is excluded by strict repo priority
  • package r-viridis-0.6.5-r43hc72bb7e_0 is excluded by strict repo priority
  • package simplejson-3.19.2-py39he962182_0 is excluded by strict repo priority
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  • package xopen-2.0.1-py39h6e9494a_0 is excluded by strict repo priority

I will be greatful for a solution ! please !!!!!!!!!!

2

Hello @alinawazfcc,

Run conda config --set channel_priority flexible and then try reinstalling.

2 Likes
3

thanks alot! it worked now :slight_smile:

4 Likes
4

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