I'm using Qiime ver 2024.10. Before, I ran a successful qiime diversity.
However, now, an error appears
Here is my script
qiime diversity core-metrics-phylogenetic \
--i-phylogeny Report/phylogeny-align-to-tree-mafft-fasttree/rooted_tree.qza \
--i-table Report/feature-table-filtered.qza \
--p-sampling-depth 117863 \
--m-metadata-file sample-metadata.tsv \
--output-dir Report/diversity-core-metrics-phylogenetic
/home/hanguyen/Software/anaconda3/envs/qiime2-amplicon-2025.10/lib/python3.10/site-packages/rescript/evaluate.py:25: UserWarning: pkg_resources is deprecated as an API. See Package Discovery and Resource Access using pkg_resources - setuptools 80.9.0 documentation. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. import pkg_resources
Plugin error from diversity:
Command '['faithpd', '-i', '/tmp/qiime2/hanguyen/processes/48325-1764642229.95@hanguyen/tmp/q2-OutPath-zq4_lwf0', '-t', '/tmp/qiime2/hanguyen/data/a381fdbe-d04e-499d-9cd3-6373454a7a40/data/tree.nwk', '-o', '/tmp/qiime2/hanguyen/processes/48325-1764642229.95@hanguyen/tmp/q2-OutPath-hw1jikom']' returned non-zero exit status 127.
Debug info has been saved to /tmp/qiime2-q2cli-err-jnl3nm5o.log
I also tried another version of qiime, like 2024.5 and 2025.10, but it still has an error.
Really don't know how to fix it. I don't know if this error is from my conda or what.