Sure! Please see the error below.
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(qiime2-2019.7) ➜ sample-classifier-PSC qiime sample-classifier classify-samples
–i-table fecal-feature-table-PSC-Controls.qza
–m-metadata-file Merged_metadata-PSC-Controls.tsv
–m-metadata-column Diagnosis
–p-optimize-feature-selection
–p-parameter-tuning
–p-estimator RandomForestClassifier
–p-n-estimators 20
–p-random-state 123 --verbose
–output-dir 2019-7-classifier
/Users/lenalapidot/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/sklearn/model_selection/_search.py:813: DeprecationWarning: The default of the iid
parameter will change from True to False in version 0.22 and will be removed in 0.24. This will change numeric results when test-set sizes are unequal.
DeprecationWarning)
Control PSC
id
52a 0.059544 0.940456
18B 0.950000 0.050000
95 0.267923 0.732077
28B 0.900000 0.100000
164 0.259544 0.740456
5B 0.791071 0.208929
99 0.703571 0.296429
52b 0.097044 0.902956
12A 0.703571 0.296429
12B 1.000000 0.000000
36B 0.850000 0.150000
11 0.501852 0.498148
91b 0.505423 0.494577
Traceback (most recent call last):
File “/Users/lenalapidot/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/q2cli/commands.py”, line 327, in call
results = action(**arguments)
File “</Users/lenalapidot/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/decorator.py:decorator-gen-148>”, line 2, in classify_samples
File “/Users/lenalapidot/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/qiime2/sdk/action.py”, line 240, in bound_callable
output_types, provenance)
File “/Users/lenalapidot/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/qiime2/sdk/action.py”, line 477, in callable_executor
outputs = self._callable(scope.ctx, **view_args)
File “/Users/lenalapidot/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/q2_sample_classifier/classify.py”, line 176, in classify_samples
missing_samples=‘ignore’, palette=palette)
File “</Users/lenalapidot/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/decorator.py:decorator-gen-487>”, line 2, in confusion_matrix
File “/Users/lenalapidot/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/qiime2/sdk/action.py”, line 240, in bound_callable
output_types, provenance)
File “/Users/lenalapidot/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/qiime2/sdk/action.py”, line 445, in callable_executor
ret_val = self._callable(output_dir=temp_dir, **view_args)
File “/Users/lenalapidot/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/q2_sample_classifier/classify.py”, line 363, in confusion_matrix
plot_title=‘confusion matrix’)
File “/Users/lenalapidot/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/q2_sample_classifier/utilities.py”, line 494, in _plot_accuracy
roc = _generate_roc_plots(truth, probabilities, palette)
File “/Users/lenalapidot/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/q2_sample_classifier/visuals.py”, line 184, in _generate_roc_plots
binarized_targets, probabilities, classes)
File “/Users/lenalapidot/miniconda2/envs/qiime2-2019.7/lib/python3.6/site-packages/q2_sample_classifier/visuals.py”, line 238, in _roc_per_class
binarized_targets[:, i], probabilities[:, i])
IndexError: index 1 is out of bounds for axis 1 with size 1
Plugin error from sample-classifier:
index 1 is out of bounds for axis 1 with size 1
See above for debug info.