rtshima17
July 3, 2020, 11:06pm
#1
hello,
So I have been getting the following error:
ERROR: No matching distribution found for qiime2==2020.6.* (from q2studio==2020.6.0)
I have tried deactivating conda and reactivating
I dont know what else to try…
Thank you,
thermokarst
July 9, 2020, 2:14pm
#2
Hi @rtshima17 !
This error means you are attempting to install q2studio in an environment that is missing qiime2==2020.6 in it. Maybe you have a different version of qiime2 installed in your environment? One way to check is after activating, run: conda list to see all of the packages in the env (and their versions). Please do that and share the results here.
rtshima17
July 10, 2020, 12:33am
#3
thank you so much for replying. this is what pops up:
(qiime2-2020.6) IDOMs-MacBook-Pro:qiime RAFA idomstudent$ conda list
# packages in environment at /Users/idomstudent/miniconda3/envs/qiime2-2020.6:
#
# Name Version Build Channel
_r-mutex 1.0.1 anacondar_1 conda-forge
appnope 0.1.0 py36h9f0ad1d_1001 conda-forge
arb-bio-tools 6.0.6 h82bc0eb_8 bioconda
attrs 19.3.0 py_0 conda-forge
backcall 0.2.0 pyh9f0ad1d_0 conda-forge
bibtexparser 1.1.0 py_0 conda-forge
bioconductor-biobase 2.42.0 r351h1de35cc_1 bioconda
bioconductor-biocgenerics 0.28.0 r351_1 bioconda
bioconductor-biocparallel 1.16.2 r351h12d9a10_1 bioconda
bioconductor-biostrings 2.50.2 r351h1de35cc_0 bioconda
bioconductor-dada2 1.10.0 r351h0a44026_0 bioconda
bioconductor-delayedarray 0.8.0 r351h1de35cc_0 bioconda
bioconductor-genomeinfodb 1.18.1 r351_0 bioconda
bioconductor-genomeinfodbdata 1.2.1 r351_0 bioconda
bioconductor-genomicalignments 1.18.1 r351h1de35cc_0 bioconda
bioconductor-genomicranges 1.34.0 r351h1de35cc_0 bioconda
bioconductor-iranges 2.16.0 r351h1de35cc_0 bioconda
bioconductor-rsamtools 1.34.0 r351h0a44026_0 bioconda
bioconductor-s4vectors 0.20.1 r351h470a237_0 bioconda
bioconductor-shortread 1.40.0 r351h0a44026_0 bioconda
bioconductor-summarizedexperiment 1.12.0 r351_0 bioconda
bioconductor-xvector 0.22.0 r351h1de35cc_0 bioconda
bioconductor-zlibbioc 1.28.0 r351h1de35cc_0 bioconda
biom-format 2.1.8 py36h3b54f70_0 conda-forge
blas 2.16 openblas conda-forge
blast 2.6.0 boost1.64_2 bioconda
bleach 3.1.5 pyh9f0ad1d_0 conda-forge
bokeh 2.1.1 py36h9f0ad1d_0 conda-forge
boost-cpp 1.70.0 h75728bb_2 conda-forge
bowtie2 2.4.1 py36hae8abbf_2 bioconda
brotlipy 0.7.0 py36h37b9a7d_1000 conda-forge
bwidget 1.9.14 0 conda-forge
bzip2 1.0.8 h0b31af3_2 conda-forge
ca-certificates 2020.6.20 hecda079_0 conda-forge
cachecontrol 0.12.6 py_0 conda-forge
cairo 1.16.0 hec6a9b0_1003 conda-forge
cctools 927.0.2 h5ba7a2e_4 conda-forge
certifi 2020.6.20 py36h9f0ad1d_0 conda-forge
cffi 1.14.0 py36h356ff06_0 conda-forge
chardet 3.0.4 py36h9f0ad1d_1006 conda-forge
clang 9.0.1 default_hf57f61e_0 conda-forge
clang-tools 9.0.1 default_hf57f61e_0 conda-forge
clang_osx-64 9.0.1 h05bbb7f_0 conda-forge
clangxx 9.0.1 default_hf57f61e_0 conda-forge
clangxx_osx-64 9.0.1 h05bbb7f_2 conda-forge
click 7.1.2 pyh9f0ad1d_0 conda-forge
compiler-rt 9.0.1 h6a512c6_3 conda-forge
compiler-rt_osx-64 9.0.1 h99342c6_3 conda-forge
cryptography 2.9.2 py36hc9d8292_0 conda-forge
curl 7.68.0 h8754def_0 conda-forge
cutadapt 2.10 py36h01d97ff_0 bioconda
cycler 0.10.0 py_2 conda-forge
cython 0.29.20 py36h0130604_0 conda-forge
deblur 1.1.0 py_2 bioconda
decorator 4.4.2 py_0 conda-forge
defusedxml 0.6.0 py_0 conda-forge
dendropy 4.2.0 py_2 bioconda
dnaio 0.4.2 py36h01d97ff_0 bioconda
emperor 1.0.1 py36h9f0ad1d_0 conda-forge
entrypoints 0.3 py36h9f0ad1d_1001 conda-forge
fastcluster 1.1.26 py36hcc1bba6_1 conda-forge
fasttree 2.1.10 0 bioconda
fontconfig 2.13.1 h6b1039f_1001 conda-forge
freetype 2.10.2 h8da9a1a_0 conda-forge
fribidi 1.0.9 h0b31af3_0 conda-forge
future 0.18.2 py36h9f0ad1d_1 conda-forge
gettext 0.19.8.1 h46ab8bc_1002 conda-forge
gfortran_impl_osx-64 7.3.0 hf4212f2_2 conda-forge
gfortran_osx-64 7.3.0 h22b1bf0_11 conda-forge
glib 2.65.0 h577aef8_0 conda-forge
gmp 6.2.0 h4a8c4bd_2 conda-forge
gneiss 0.4.6 py_0 bioconda
graphite2 1.3.13 h12caacf_1001 conda-forge
gsl 2.5 ha2d443c_1 conda-forge
h5py 2.10.0 nompi_py36h106b333_102 conda-forge
harfbuzz 2.4.0 hd8d2a14_3 conda-forge
hdf5 1.10.5 nompi_h3e39495_1104 conda-forge
hdmedians 0.13 py36h255dfe6_1002 conda-forge
hmmer 3.1b2 3 bioconda
htslib 1.10.2 h862b14c_0 bioconda
icu 64.2 h6de7cb9_1 conda-forge
idna 2.9 py_1 conda-forge
ijson 3.0.4 pyh9f0ad1d_0 conda-forge
importlib-metadata 1.6.1 py36h9f0ad1d_0 conda-forge
importlib_metadata 1.6.1 0 conda-forge
ipykernel 5.3.0 py36h95af2a2_0 conda-forge
ipython 7.15.0 py36h9f0ad1d_0 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
ipywidgets 7.5.1 py_0 conda-forge
iqtree 2.0.3 h7eed37d_0 bioconda
isl 0.19 0 conda-forge
jedi 0.17.1 py36h9f0ad1d_0 conda-forge
jinja2 2.11.2 pyh9f0ad1d_0 conda-forge
joblib 0.15.1 py_0 conda-forge
jpeg 9d h0b31af3_0 conda-forge
jsonschema 3.2.0 py36h9f0ad1d_1 conda-forge
jupyter_client 6.1.3 py_0 conda-forge
jupyter_core 4.6.3 py36h9f0ad1d_1 conda-forge
kiwisolver 1.2.0 py36h863e41a_0 conda-forge
krb5 1.16.4 h1752a42_0 conda-forge
ld64 450.3 h3c32e8a_4 conda-forge
libarbdb 6.0.6 h82bc0eb_8 bioconda
libblas 3.8.0 16_openblas conda-forge
libcblas 3.8.0 16_openblas conda-forge
libcurl 7.68.0 h709d2b2_0 conda-forge
libcxx 10.0.0 h1af66ff_2 conda-forge
libdeflate 1.3 h01d97ff_0 conda-forge
libedit 3.1.20191231 hed1e85f_0 conda-forge
libffi 3.2.1 h4a8c4bd_1007 conda-forge
libgcc 4.8.5 1 conda-forge
libgfortran 4.0.0 2 conda-forge
libiconv 1.15 h0b31af3_1006 conda-forge
liblapack 3.8.0 16_openblas conda-forge
liblapacke 3.8.0 16_openblas conda-forge
libllvm9 9.0.1 h7475705_1 conda-forge
libopenblas 0.3.9 h3d69b6c_0 conda-forge
libpng 1.6.37 hbbe82c9_1 conda-forge
libsodium 1.0.17 h01d97ff_0 conda-forge
libssh2 1.9.0 h39bdce6_2 conda-forge
libtiff 4.1.0 h2ae36a8_6 conda-forge
libwebp-base 1.1.0 h0b31af3_3 conda-forge
libxml2 2.9.10 h53d96d6_0 conda-forge
llvm-openmp 10.0.0 h28b9765_0 conda-forge
lockfile 0.12.2 py_1 conda-forge
lz4-c 1.9.2 h4a8c4bd_1 conda-forge
mafft 7.470 h0b31af3_0 bioconda
make 4.3 h0b31af3_0 conda-forge
markupsafe 1.1.1 py36h37b9a7d_1 conda-forge
matplotlib 3.2.2 0 conda-forge
matplotlib-base 3.2.2 py36h83d3ec1_0 conda-forge
mistune 0.8.4 py36h37b9a7d_1001 conda-forge
more-itertools 8.4.0 py_0 conda-forge
mpc 1.1.0 h4160ff4_1007 conda-forge
mpfr 4.0.2 h65ac59c_1 conda-forge
msgpack-python 1.0.0 py36h863e41a_1 conda-forge
natsort 7.0.1 py_0 conda-forge
nbconvert 5.6.1 py36h9f0ad1d_1 conda-forge
nbformat 5.0.6 py_0 conda-forge
ncurses 6.1 h0a44026_1002 conda-forge
networkx 2.4 py_1 conda-forge
nose 1.3.7 py36h9f0ad1d_1004 conda-forge
notebook 6.0.3 py36h9f0ad1d_0 conda-forge
numpy 1.18.5 py36hdc5ca10_0 conda-forge
olefile 0.46 py_0 conda-forge
openjdk 11.0.1 hbbe82c9_1018 conda-forge
openssl 1.1.1g h0b31af3_0 conda-forge
packaging 20.4 pyh9f0ad1d_0 conda-forge
pandas 0.25.3 py36h4f17bb1_0 conda-forge
pandoc 2.9.2.1 0 conda-forge
pandocfilters 1.4.2 py_1 conda-forge
pango 1.42.4 haa940fe_4 conda-forge
parso 0.7.0 pyh9f0ad1d_0 conda-forge
patsy 0.5.1 py_0 conda-forge
pcre 8.44 h4a8c4bd_0 conda-forge
perl 5.26.2 haec8ef5_1006 conda-forge
pexpect 4.8.0 py36h9f0ad1d_1 conda-forge
pickleshare 0.7.5 py36h9f0ad1d_1001 conda-forge
pigz 2.3.4 hbbe82c9_1 conda-forge
pillow 7.1.2 py36h2ae5dfa_0 conda-forge
pip 20.1.1 py_1 conda-forge
pixman 0.38.0 h01d97ff_1003 conda-forge
pluggy 0.13.1 py36h9f0ad1d_2 conda-forge
prometheus_client 0.8.0 pyh9f0ad1d_0 conda-forge
prompt-toolkit 3.0.5 py_1 conda-forge
psutil 5.7.0 py36h37b9a7d_1 conda-forge
ptyprocess 0.6.0 py_1001 conda-forge
py 1.8.2 pyh9f0ad1d_0 conda-forge
pycparser 2.20 pyh9f0ad1d_2 conda-forge
pygments 2.6.1 py_0 conda-forge
pyopenssl 19.1.0 py_1 conda-forge
pyparsing 2.4.7 pyh9f0ad1d_0 conda-forge
pyrsistent 0.16.0 py36h37b9a7d_0 conda-forge
pysocks 1.7.1 py36h9f0ad1d_1 conda-forge
pytest 5.4.3 py36h9f0ad1d_0 conda-forge
python 3.6.10 h4334963_1011_cpython conda-forge
python-dateutil 2.8.1 py_0 conda-forge
python_abi 3.6 1_cp36m conda-forge
pytz 2020.1 pyh9f0ad1d_0 conda-forge
pyyaml 5.3.1 py36h37b9a7d_0 conda-forge
pyzmq 19.0.1 py36h820b253_0 conda-forge
q2-alignment 2020.6.0 py36_0 qiime2/label/r2020.6
q2-composition 2020.6.0 py36_0 qiime2/label/r2020.6
q2-cutadapt 2020.6.0 py36_0 qiime2/label/r2020.6
q2-dada2 2020.6.0 py36_0 qiime2/label/r2020.6
q2-deblur 2020.6.0 py36_0 qiime2/label/r2020.6
q2-demux 2020.6.0 py36_0 qiime2/label/r2020.6
q2-diversity 2020.6.0 py36_0 qiime2/label/r2020.6
q2-diversity-lib 2020.6.0 0 qiime2/label/r2020.6
q2-emperor 2020.6.0 py36_0 qiime2/label/r2020.6
q2-feature-classifier 2020.6.0 py36_0 qiime2/label/r2020.6
q2-feature-table 2020.6.0 py36_0 qiime2/label/r2020.6
q2-fragment-insertion 2020.6.0 py36_0 qiime2/label/r2020.6
q2-gneiss 2020.6.0 py36_0 qiime2/label/r2020.6
q2-longitudinal 2020.6.0 py36_0 qiime2/label/r2020.6
q2-metadata 2020.6.0 py36_0 qiime2/label/r2020.6
q2-phylogeny 2020.6.0 py36_0 qiime2/label/r2020.6
q2-quality-control 2020.6.0 py36_0 qiime2/label/r2020.6
q2-quality-filter 2020.6.0 py36_0 qiime2/label/r2020.6
q2-sample-classifier 2020.6.0 py36_0 qiime2/label/r2020.6
q2-taxa 2020.6.0 py36_0 qiime2/label/r2020.6
q2-types 2020.6.0 py36_0 qiime2/label/r2020.6
q2-vsearch 2020.6.0 py36_0 qiime2/label/r2020.6
q2cli 2020.6.0 py36_0 qiime2/label/r2020.6
q2templates 2020.6.0 py36_0 qiime2/label/r2020.6
r-assertthat 0.2.1 r35h6115d3f_1 conda-forge
r-backports 1.1.6 r35h17f1fa6_1 conda-forge
r-base 3.5.1 hc03ab29_1012 conda-forge
r-bh 1.72.0_3 r35h6115d3f_0 conda-forge
r-bitops 1.0_6 r35h17f1fa6_1003 conda-forge
r-callr 3.4.3 r35h6115d3f_0 conda-forge
r-cli 2.0.2 r35h6115d3f_0 conda-forge
r-cluster 2.1.0 r35h384270c_2 conda-forge
r-colorspace 1.4_1 r35h17f1fa6_1 conda-forge
r-crayon 1.3.4 r35h6115d3f_1002 conda-forge
r-data.table 1.12.8 r35h17f1fa6_0 conda-forge
r-desc 1.2.0 r35h6115d3f_1002 conda-forge
r-digest 0.6.25 r35hc5da6b9_1 conda-forge
r-ellipsis 0.3.0 r35h17f1fa6_0 conda-forge
r-evaluate 0.14 r35h6115d3f_1 conda-forge
r-fansi 0.4.1 r35h17f1fa6_0 conda-forge
r-farver 2.0.3 r35hc5da6b9_0 conda-forge
r-formatr 1.7 r35h6115d3f_1 conda-forge
r-futile.logger 1.4.3 r35h6115d3f_1002 conda-forge
r-futile.options 1.0.1 r35h6115d3f_1001 conda-forge
r-ggplot2 3.3.0 r35h6115d3f_0 conda-forge
r-glue 1.4.0 r35h17f1fa6_0 conda-forge
r-gtable 0.3.0 r35h6115d3f_2 conda-forge
r-hwriter 1.3.2 r35h6115d3f_1002 conda-forge
r-isoband 0.2.1 r35hc5da6b9_0 conda-forge
r-labeling 0.3 r35h6115d3f_1002 conda-forge
r-lambda.r 1.2.4 r35h6115d3f_0 conda-forge
r-lattice 0.20_41 r35h17f1fa6_1 conda-forge
r-latticeextra 0.6_28 r35h6115d3f_1002 conda-forge
r-lifecycle 0.2.0 r35h6115d3f_0 conda-forge
r-magrittr 1.5 r35h6115d3f_1002 conda-forge
r-mass 7.3_51.6 r35h17f1fa6_1 conda-forge
r-matrix 1.2_18 r35h26f5615_2 conda-forge
r-matrixstats 0.56.0 r35h17f1fa6_0 conda-forge
r-mgcv 1.8_31 r35h26f5615_0 conda-forge
r-munsell 0.5.0 r35h6115d3f_1002 conda-forge
r-nlme 3.1_147 r35h384270c_0 conda-forge
r-permute 0.9_5 r35h6115d3f_2 conda-forge
r-pillar 1.4.3 r35h6115d3f_0 conda-forge
r-pkgbuild 1.0.7 r35h6115d3f_0 conda-forge
r-pkgconfig 2.0.3 r35h6115d3f_0 conda-forge
r-pkgload 1.0.2 r35hc5da6b9_1001 conda-forge
r-plyr 1.8.6 r35hc5da6b9_0 conda-forge
r-praise 1.0.0 r35h6115d3f_1003 conda-forge
r-prettyunits 1.1.1 r35h6115d3f_0 conda-forge
r-processx 3.4.2 r35h17f1fa6_0 conda-forge
r-ps 1.3.2 r35h17f1fa6_0 conda-forge
r-r6 2.4.1 r35h6115d3f_0 conda-forge
r-rcolorbrewer 1.1_2 r35h6115d3f_1002 conda-forge
r-rcpp 1.0.4.6 r35hc5da6b9_0 conda-forge
r-rcppparallel 5.0.0 r35hc5da6b9_0 conda-forge
r-rcurl 1.98_1.2 r35h17f1fa6_0 conda-forge
r-reshape2 1.4.4 r35hc5da6b9_0 conda-forge
r-rlang 0.4.5 r35h17f1fa6_2 conda-forge
r-rprojroot 1.3_2 r35h6115d3f_1002 conda-forge
r-rstudioapi 0.11 r35h6115d3f_0 conda-forge
r-scales 1.1.0 r35h6115d3f_0 conda-forge
r-snow 0.4_3 r35h6115d3f_1001 conda-forge
r-stringi 1.4.6 r35h3211bb2_1 conda-forge
r-stringr 1.4.0 r35h6115d3f_1 conda-forge
r-testthat 2.3.2 r35hc5da6b9_0 conda-forge
r-tibble 3.0.1 r35h17f1fa6_0 conda-forge
r-utf8 1.1.4 r35h17f1fa6_1002 conda-forge
r-vctrs 0.2.4 r35h17f1fa6_0 conda-forge
r-vegan 2.5_6 r35hb1cbdc7_1 conda-forge
r-viridislite 0.3.0 r35h6115d3f_1002 conda-forge
r-withr 2.2.0 r35h6115d3f_0 conda-forge
r-zeallot 0.1.0 r35h6115d3f_1001 conda-forge
raxml 8.2.12 h0b31af3_2 bioconda
readline 8.0 hcfe32e1_0 conda-forge
requests 2.24.0 pyh9f0ad1d_0 conda-forge
samtools 1.10 h457b48f_2 bioconda
scikit-bio 0.5.5 py36h917ab60_1000 conda-forge
scikit-learn 0.23.1 py36hef903b7_0 conda-forge
scipy 1.4.1 py36h1dac7e4_3 conda-forge
seaborn 0.10.1 1 conda-forge
seaborn-base 0.10.1 py_1 conda-forge
send2trash 1.5.0 py_0 conda-forge
sepp 4.3.10 py36_0 bioconda
setuptools 47.3.1 py36h9f0ad1d_0 conda-forge
sina 1.6.1 ha016f77_0 bioconda
six 1.15.0 pyh9f0ad1d_0 conda-forge
sortmerna 2.0 h5c9b4e4_4 bioconda
sqlite 3.30.1 h93121df_0 conda-forge
statsmodels 0.11.1 py36h37b9a7d_2 conda-forge
tapi 1000.10.8 ha1b3eb9_4 conda-forge
tbb 2019.9 ha1b3eb9_1 conda-forge
terminado 0.8.3 py36h9f0ad1d_1 conda-forge
testpath 0.4.4 py_0 conda-forge
threadpoolctl 2.1.0 pyh5ca1d4c_0 conda-forge
tk 8.6.10 hbbe82c9_0 conda-forge
tktable 2.10 h008db23_3 conda-forge
tornado 6.0.4 py36h37b9a7d_1 conda-forge
traitlets 4.3.3 py36h9f0ad1d_1 conda-forge
typing_extensions 3.7.4.2 py_0 conda-forge
tzlocal 2.1 pyh9f0ad1d_0 conda-forge
unifrac 0.10.0 py36h04f5b5a_1 bioconda
urllib3 1.25.9 py_0 conda-forge
vsearch 2.7.0 1 bioconda
wcwidth 0.2.5 pyh9f0ad1d_0 conda-forge
webencodings 0.5.1 py_1 conda-forge
wheel 0.34.2 py_1 conda-forge
widgetsnbextension 3.5.1 py36_0 conda-forge
xopen 0.9.0 py36h9f0ad1d_0 conda-forge
xz 5.2.5 h0b31af3_0 conda-forge
yaml 0.2.5 h0b31af3_0 conda-forge
zeromq 4.3.2 h6de7cb9_2 conda-forge
zipp 3.1.0 py_0 conda-forge
zlib 1.2.11 h0b31af3_1006 conda-forge
zstd 1.4.4 h4b3e974_3 conda-forge
thermokarst
July 10, 2020, 2:38pm
#4
Great, thanks for that @rtshima17 ! Well, I have to agree with that error message - I don't see the qiime2 package anywhere in that list - do you?
Let's start over, first, delete that environment:
conda deactivate
conda env remove -n qiime2-2020.6
Then, follow the installation instructions at docs.qiime2.org again - they should go much more quickly this time, since conda caches your installation files.
I have no clue how your env wound up with a missing qiime2 package, but my guess is that it somehow was accidentally removed while you were trying to install q2studio.
Keep us posted!
rtshima17
July 11, 2020, 2:16am
#5
thermokarst:
qiime2-2020.6
thank you so much, this helped a lot!! its working now!
system
August 11, 2020, 8:16am
#6
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