Hi all –
Thanks in advance for all the help on the forum. I am trying to run feature-classifier classify-sklearn on my 16S samples using Silva. I am using Mac Mojave with Qiime installed through conda and running on terminal. First, I ran
`/qiime feature-classifier classify-sklearn \ > --i-classifier silva-132-99-515-806-nb-classifier.qza \ > --i-reads repseqs-deblur-16S.qza \ > --o-classification taxonomy-16S.qza`
[Errno 28] No space left on device
Then I read through the forums and checked
`df -h Filesystem Size Used Avail Capacity iused ifree %iused Mounted on /dev/disk1s1 113Gi 97Gi 13Gi 88% 1784252 9223372036852991555 0% / devfs 190Ki 190Ki 0Bi 100% 658 0 100% /dev /dev/disk1s4 113Gi 2.0Gi 13Gi 14% 2 9223372036854775805 0% /private/var/vm map -hosts 0Bi 0Bi 0Bi 100% 0 0 100% /net map auto_home 0Bi 0Bi 0Bi 100% 0 0 100% /home /dev/disk2s2 465Gi 312Gi 154Gi 67% 6172132 4288795147 0% /Volumes/NRG`
So then I ran
and confirmed with
Then I re-ran my feature-classifier and this time it ran for longer and then I got the message
Killed: 9 nothing else and no taxonomy file exported.
I couldn’t figure out from the forums what to do from this point to try to work around this. I’ve successfully ran this command before on 16S samples but with a smaller number of files so I wonder if that’s the reason why this isn’t working now.