Hi all,
I've just started using QIIME2 on my home computer and am currently working my way through the 'Moving Pictures' tutorial. I'm trying to run one of the steps and I keep getting the same Errno 13 message. Below is the debug info. I'm running Ubuntu as admin and it still isn't working! Any help would be greatly appreciated!
James H
/home/james/anaconda3/envs/qiime2-2020.8/lib/python3.6/site-packages/sklearn/metrics/pairwise.py:1761: DataConversionWarning: Data was converted to boolean for metric jaccard
warnings.warn(msg, DataConversionWarning)
/home/james/anaconda3/envs/qiime2-2020.8/lib/python3.6/site-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:152: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -0.009921666875883169 and the largest is 3.282046672169648.
RuntimeWarning
/home/james/anaconda3/envs/qiime2-2020.8/lib/python3.6/site-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:152: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -0.00838042021567985 and the largest is 2.5787674525060686.
RuntimeWarning
/home/james/anaconda3/envs/qiime2-2020.8/lib/python3.6/site-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:152: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -0.016742395472169422 and the largest is 2.3800660955056223.
RuntimeWarning
Traceback (most recent call last):
File "/home/james/anaconda3/envs/qiime2-2020.8/lib/python3.6/site-packages/q2cli/commands.py", line 329, in __call__
results = action(**arguments)
File "<decorator-gen-421>", line 2, in core_metrics_phylogenetic
File "/home/james/anaconda3/envs/qiime2-2020.8/lib/python3.6/site-packages/qiime2/sdk/action.py", line 245, in bound_callable
output_types, provenance)
File "/home/james/anaconda3/envs/qiime2-2020.8/lib/python3.6/site-packages/qiime2/sdk/action.py", line 512, in _callable_executor_
aliased_result = output._alias(prov)
File "/home/james/anaconda3/envs/qiime2-2020.8/lib/python3.6/site-packages/qiime2/sdk/result.py", line 163, in _alias
self.type, self.format, clone_original, provenance_capture)
File "/home/james/anaconda3/envs/qiime2-2020.8/lib/python3.6/site-packages/qiime2/core/archive/archiver.py", line 316, in from_data
Format.write(rec, type, format, data_initializer, provenance_capture)
File "/home/james/anaconda3/envs/qiime2-2020.8/lib/python3.6/site-packages/qiime2/core/archive/format/v5.py", line 21, in write
provenance_capture)
File "/home/james/anaconda3/envs/qiime2-2020.8/lib/python3.6/site-packages/qiime2/core/archive/format/v1.py", line 19, in write
provenance_capture)
File "/home/james/anaconda3/envs/qiime2-2020.8/lib/python3.6/site-packages/qiime2/core/archive/format/v0.py", line 62, in write
data_initializer(data_dir)
File "/home/james/anaconda3/envs/qiime2-2020.8/lib/python3.6/site-packages/qiime2/sdk/result.py", line 158, in clone_original
copy_function=os.link) # Use hardlinks
File "/home/james/anaconda3/envs/qiime2-2020.8/lib/python3.6/shutil.py", line 365, in copytree
raise Error(errors)
shutil.Error: [('/tmp/qiime2-archive-z8eu8kc6/2736550c-92f5-4656-922a-a6f75e50f653/data/feature-table.biom', '/tmp/qiime2-archive-xztkdfhs/9e0cb922-432d-430c-97e4-8a3a63cdf75c/data/feature-table.biom', "[Errno 13] Permission denied: '/tmp/qiime2-archive-z8eu8kc6/2736550c-92f5-4656-922a-a6f75e50f653/data/feature-table.biom' -> '/tmp/qiime2-archive-xztkdfhs/9e0cb922-432d-430c-97e4-8a3a63cdf75c/data/feature-table.biom'")]
