Hi! I was wondering if Qiime 2 has anything similar to the “add_vectors” feature from Qiime1’s make_emperor.py? I have paired samples and I would like to add lines to connect these samples. I was looking through the help on it, but don’t see the feature anymore. It’d be great if this feature could be added to Qiime2!
-bash-4.1$ qiime emperor plot --help
Usage: qiime emperor plot [OPTIONS]
Generates an interactive ordination plot where the user can visually
integrate sample metadata.
–i-pcoa ARTIFACT PATH PCoAResults
The principal coordinates matrix to be
–m-metadata-file MULTIPLE PATH
Metadata file or artifact viewable as
metadata. This option may be supplied
multiple times to merge metadata. The sample
–p-custom-axes MULTIPLE TEXT Numeric sample metadata columns that should
be included as axes in the Emperor plot.
–o-visualization VISUALIZATION PATH
[required if not passing --output-dir]
–output-dir DIRECTORY Output unspecified results to a directory
–cmd-config PATH Use config file for command options
–verbose Display verbose output to stdout and/or
stderr during execution of this action.
–quiet Silence output if execution is successful
(silence is golden). [default: False]
–citations Show citations and exit.
–help Show this message and exit.