Download Kruskal-Wallis raw data

Welcome to the forum, @Edy2183!
There are a number of different approaches you could take, some of which have been discussed here already. A quick search of the forum will often save you a little time waiting for a response :wink: .

The qiime tools export command can be used to grab the data from any .qza or .qzv file. Hereā€™s a good discussion of using that tool to get Kruskal-Wallis data. Thereā€™s more on that in the Exporting Data Tutorial.

All QIIME 2 artifacts and visualizations are, fundamentally, just zipped archives. You could also unzip the viz youā€™re working with, and take a look at the files in the data folder.

Finally, if you look closely at your visualization using qiime tools view faith-grpup-significance.qzv, or by opening it at view.qiime2.org, youā€™ll notice a ā€œdownload csvā€ link, that will allow you download the data for pairwise comparisons.

:balloon:
Chris

1 Like