Does tools import emp-paired-end-sequences supports older EMP protocol with barcodes on reverse primer instead of forward primer?

[zwei (Zhengzheng Wei)]

don’t know the detailed implementation of the import tool, would like to know if it supports older EMP protocol with barcodes on reverse primer instead of forward primer? for EMPPairedEndSeuqences
thanks!

[Nicholas_Bokulich]

H @zwei,
Thanks for posting. When using the EMP protocol, the barcodes should be sequenced on a separate read from the forward and reverse reads, delivering three separate files. As long as a separate barcode file exists, it does not matter whether this barcode was attached to the forward or reverse primers and the same import protocol should be used.

I hope that clarifies your question!