Do not want a sampling depth for core-metrics-phylogenetic function

I am using CSS normalizing and importing my tables back into QIIME2 for analysis. Since I already normalized is there a way I could not enter a sampling depth in core-metrics?

While the range of my total normalized hits is small (3200 to 3790) I do not want to rarify down to 3200-- but is this my best option?

Thank you!

Good morning Maggie,

I think you could use the plugins directly to avoid the rarefaction step.

Let me know if this works well for you.



Thank you! That worked great.


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