I am using the qiime2R package to import
.qza files into R, follwing this tutorial and it works fine. I want to create a
phyloseq object for further analysis.
However, I have differences in the depth of the taxonomic assignment in my
taxonomy.qza file which makes it not possible to use the code of the tutorial to get a nice
I tried to use the
qiime taxa collapse command to collapse to an even taxonomic depth, but if use this comand the
Feature.ID gets replaced with the taxonomy so I don’t know how to use this to create a
Is there any solution that I can create a
phyloseq object even if I have differences in the depth of the taxonomic assignment in my
Thanks in advance!