My sequences are demultiplexed but as the pipeline recommends, I need to run demux for quality control. I run this code and get this error. I tried to play around the code but in vain! Thanks a lot
After - i-data demux there should be a space. Same for - o-visualization demux, there should be a space after demux. Could you please run the commands with space included and see what happens?
It looks like you’re having a path issue: you’re using a relative address and this folder doesn’t exist: demux/Users/hebahussein/Desktop/paired-end-demux.qza. That’s what the error message said:
Invalid value for “–i-data”: 'demux/Users/hebahussein/Desktop/paired-
end-demux.qza’ is not a valid filepath
Reviewing a unix tutorial might help you understand paths better, since it seems like a lot of your issues are around paths.