Demultiplexing double barcode data


I am fairly certain this cannot be done yet (and cannot be done in QIIME1 either). Demultiplexing and joining reads that have barcodes on both strands. They are part of the forward-reverse reads (starting sequence). We have to use multiple platforms to deal with them and its a pain. Would be so much nicer to do everything in QIIME2 ! Thanks :))

Hi @mpodar! Does this line up with the discussion presented in this thread? I might be misunderstanding your suggestion, so please correct me if I am mistaken! Thanks!