Hello everyone,
Can anyone help me to remove degenerate primer from my fastq raw data files? My primers are given below
341 F: 5’ CCTACGGGAGGCAGCAG 3’
806 R: 5’ GGACTACHVGGGTWTCTAAT 3’
looking for your help.
You can use trim-paired and follow the instructions in this tutorial (which shows the protocol for single-end reads, but should give you an idea how to use trim-paired).
Good luck!
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