dada2 no package called "GenomeInfoDbData" after upgrading to 2019.7

[Nicholas_Bokulich]

Welcome to the forum, @chelsea.brisson.423!

@chelsea.brisson.423

there is no package called ‘GenomeInfoDbData’

Looks like your installation partially failed. Although for a different plugin, this same advice should apply:

aldex2 error in QIIME2 2019.7

Hi @Bing, The likely way to fix this would be to install any dependencies that pop up. To fix this, do BiocManager::install("GenomeInfoDbData"). You may need to do this for other dependencies as well! Cheers, Dan

@chelsea.brisson.423

We recently upgraded from qiime2 version 2019.4 to 2019.7 to avoid the error "no module named ‘q2cli’ " in the downstream analysis, and are running 2019.7 only now. Any ideas? Thank you!!

While you are at it, maybe just install the latest QIIME 2 release: 2019.10. If you are lucky, the installation will successfully complete this time around and you will not need to install manually!