dada2 denoise-ccs: An error was encountered while running DADA2 in R (return code 1), please inspect stdout and stderr to learn more.

Technical Support
3

Hi @acmaguila,

I think this error is due to some samples with zero reads passing the primer detection. A similar issue came up in this post, which may be helpful context for you to take a look at. Can you please provide your original command?