CZI-CABANA Microbiome Bioinformatics with QIIME 2 Workshop (our first-ever online QIIME 2 workshop!)

Announcements
46

Dear Qiime team, are you going to cover shotgun metagenomic analysis in this course?

2 Likes
48

Hi! I was waiting for this course for a long time!!!! It's a great new. Thank you very much

1 Like
49

Dear QIIME 2 team,

May I ask one question? Will this course cover about applying data from Nanopore with QIIME2? Looking forward to attend your course :slight_smile: Thank you very much.

Best,
PC

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50

Excellent initiative to take this workshop online. I in GMT+9:30 timezone which will be exactly midnight when workshop will be running. if I register, Is there any possibility to have recording available (pre-recorded and live lectures) to go through?

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51

This course will be a great opportunity for me. I am going to do my Master's Dissertation Project and the laboratory is mainly using this tool. Hopefull to learn as much as I can to do my project work.

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52

Great news, thank you very much

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53

Hi @PCharoentong!

Probably not in any specific manner - the techniques and discussions planned are mostly focused on downstream analysis, and should be generally applicable to many technologies and sequencing techniques.

54

Hi @Shakuntla_Gondalia, please see the discussion above, this question has been addressed a few times. Thanks!

56

Hi @Mukil, I don't think we will have time to cover shotgun metagenomic analyses in this course, although I could certainly see it as a possibility in the near future, as part of our work outlined here:

Thanks!

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57

Thankyou for your reply @thermokarst :slight_smile:

58

I am very excited! It will be the first time I am attending this course. :grinning:

59

Hi,

I was wondering if you could please let me know when the registration is open?

Thanks

60

Hi @Barandouzi! Please see the announcement at the top of this page for all of the details.

61

Hi,

I am wondering if qiime can process sequences generated from PacBio technology (long reads). Until 2019, that was not available in qiime, but I watched recent Pacbio videos where they pointed to qiime for analysis of the microbiome reads. If yes, will this workshop cover this section?

Cheers

1 Like
62

I cant wait for this online course :slightly_smiling_face: this type, of course, will definitely boost the future research outcomes in the field of microbiology and biotechnology. thanks, QIIME 2 organizing team to conduct this type of course.

63

Hi @thermokarst
Thank you, It will be a great workshop.
Waiting for the registration link

64

Hi @Eman,

There has been a lot of discussion on this forum about analyzing PacBio sequences with QIIME 2, you should search the archives to learn more. Further discussion is off-topic for this announcement and you could open a separate topic if you have specific questions after reading the archives.

The program has limited time available, so there is probably not enough time to discussing individual sequencing technologies. The program will focus primarily on downstream analysis (which is equally applicable to PacBio, Illumina, etc) and the sections covering importing and denoising/dereplicating will most likely use Illumina data.

1 Like
65

@thermokarst i requested registration fee to caporaso.lab@gmail.com.Still waiting for reply (waiver amound) and please share the registration link.