Dear All,
I want to check the ordinations in some of developmental stages(Growing stages) of (Two subjects) two apple trees i.e. wild as well as cultivated. There are four stages each. 1234 for wild trees and 5678 has for cultivated tree. Each stages has replicates. Objective is how the microbes changes along with these growing stages 1,5= means just emerge from soil, 2,6= mid stage of plants 3, 7= high stages of plants and 4,8 are older stages of plants. I applied ordination to explore principal coordinates (PCoA) plots using the following parameters.
qiime emperor plot
–i-pcoa core-metrics-results/bray_curtis_pcoa_results.qza
–m-metadata-file growingstages-metadatanumeric.tsv
–p-custom-axes DevelopmentalStages
–o-visualization core-metrics-results/bray-curtis-emperor-developmentalstages.qzv
I got the result attached in the form of screen shots.
Now I could not write a single English sentence about coordinates and percentages. What is the conclusion of these figures. Could any one voluntarily write few of the sentences about these figures so that I would get an idea of interpretation of results.
Thanks for your Support!!
Yours Sincerely
Aqleem Abbas